STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AO062_11350Unannotated protein. (456 aa)    
Predicted Functional Partners:
AO062_11345
Unannotated protein.
 
     0.928
AO062_11335
Unannotated protein.
 
     0.927
AO062_11340
Unannotated protein.
 
     0.900
AO062_11330
Unannotated protein.
     0.893
AO062_11325
Unannotated protein.
 
   
 0.874
AO062_07135
Unannotated protein.
     0.776
AO062_20675
Unannotated protein.
     0.774
AO062_20695
Unannotated protein.
 
     0.767
AO062_20680
Unannotated protein.
 
     0.710
AO062_20720
Unannotated protein.
 
   
 0.707
Your Current Organism:
Variovorax boronicumulans
NCBI taxonomy Id: 436515
Other names: KCTC 22010, NBRC 103145, V. boronicumulans, Variovorax boronicumulans Miwa et al. 2008, strain BAM-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.