STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AO062_28105Unannotated protein. (257 aa)    
Predicted Functional Partners:
AO062_28100
Unannotated protein.
 
  0.884
AO062_28110
Unannotated protein.
 
 0.845
AO062_11920
Unannotated protein.
  
     0.770
AO062_20145
Unannotated protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.761
AO062_28115
Unannotated protein.
     
 0.671
AO062_05905
Unannotated protein.
  
     0.640
AO062_19440
Unannotated protein.
 
  0.548
AO062_28095
Unannotated protein.
       0.513
AO062_00790
Unannotated protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.475
FabD
Unannotated protein.
 
 
 0.447
Your Current Organism:
Variovorax boronicumulans
NCBI taxonomy Id: 436515
Other names: KCTC 22010, NBRC 103145, V. boronicumulans, Variovorax boronicumulans Miwa et al. 2008, strain BAM-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.