Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AO062_06270 | AO062_06280 | GCA_001752345_02521 | GCA_001752345_02523 | Unannotated protein. | Unannotated protein. | 0.535 |
AO062_06270 | AO062_06285 | GCA_001752345_02521 | GCA_001752345_02524 | Unannotated protein. | Unannotated protein. | 0.522 |
AO062_06270 | dapF | GCA_001752345_02521 | GCA_001752345_02525 | Unannotated protein. | Unannotated protein; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.498 |
AO062_06270 | xerC | GCA_001752345_02521 | GCA_001752345_02522 | Unannotated protein. | Unannotated protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.669 |
AO062_06280 | AO062_06270 | GCA_001752345_02523 | GCA_001752345_02521 | Unannotated protein. | Unannotated protein. | 0.535 |
AO062_06280 | AO062_06285 | GCA_001752345_02523 | GCA_001752345_02524 | Unannotated protein. | Unannotated protein. | 0.635 |
AO062_06280 | dapF | GCA_001752345_02523 | GCA_001752345_02525 | Unannotated protein. | Unannotated protein; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.636 |
AO062_06280 | xerC | GCA_001752345_02523 | GCA_001752345_02522 | Unannotated protein. | Unannotated protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.675 |
AO062_06285 | AO062_06270 | GCA_001752345_02524 | GCA_001752345_02521 | Unannotated protein. | Unannotated protein. | 0.522 |
AO062_06285 | AO062_06280 | GCA_001752345_02524 | GCA_001752345_02523 | Unannotated protein. | Unannotated protein. | 0.635 |
AO062_06285 | dapF | GCA_001752345_02524 | GCA_001752345_02525 | Unannotated protein. | Unannotated protein; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.953 |
AO062_06285 | xerC | GCA_001752345_02524 | GCA_001752345_02522 | Unannotated protein. | Unannotated protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.822 |
AO062_24700 | AO062_24710 | GCA_001752345_04150 | GCA_001752345_04148 | Unannotated protein. | Unannotated protein; Belongs to the ParB family. | 0.996 |
AO062_24700 | dnaA | GCA_001752345_04150 | GCA_001752345_00422 | Unannotated protein. | Unannotated protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.726 |
AO062_24700 | mfd | GCA_001752345_04150 | GCA_001752345_02982 | Unannotated protein. | Unannotated protein; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.644 |
AO062_24700 | recR | GCA_001752345_04150 | GCA_001752345_03571 | Unannotated protein. | Unannotated protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.622 |
AO062_24700 | xerC | GCA_001752345_04150 | GCA_001752345_02522 | Unannotated protein. | Unannotated protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.656 |
AO062_24700 | xerD | GCA_001752345_04150 | GCA_001752345_01694 | Unannotated protein. | Unannotated protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.638 |
AO062_24710 | AO062_24700 | GCA_001752345_04148 | GCA_001752345_04150 | Unannotated protein; Belongs to the ParB family. | Unannotated protein. | 0.996 |
AO062_24710 | dnaA | GCA_001752345_04148 | GCA_001752345_00422 | Unannotated protein; Belongs to the ParB family. | Unannotated protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.740 |
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