STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AO062_16880Unannotated protein. (114 aa)    
Predicted Functional Partners:
AO062_16885
Unannotated protein.
 
   
 0.957
AO062_16890
Unannotated protein.
 
     0.923
UrtD
Unannotated protein.
 
     0.903
UrtC
Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.901
AO062_16905
Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.865
urtA
Unannotated protein.
 
     0.838
AO062_16915
Unannotated protein.
 
     0.832
AO062_16920
Unannotated protein.
 
     0.815
AO062_13840
Unannotated protein.
 
     0.779
amiE
Unannotated protein.
 
     0.731
Your Current Organism:
Variovorax boronicumulans
NCBI taxonomy Id: 436515
Other names: KCTC 22010, NBRC 103145, V. boronicumulans, Variovorax boronicumulans Miwa et al. 2008, strain BAM-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.