STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AO062_16725Unannotated protein. (183 aa)    
Predicted Functional Partners:
AO062_20700
Unannotated protein.
    
 0.915
AO062_03660
Unannotated protein.
    
 0.915
AO062_01685
Unannotated protein.
    
  0.901
AO062_25080
Unannotated protein.
   
  
 0.697
AO062_21835
Unannotated protein.
  
    0.682
katE
Unannotated protein; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.678
AO062_27640
Unannotated protein; Belongs to the Dps family.
  
  
 0.673
AO062_16720
Unannotated protein; Belongs to the pirin family.
       0.672
argC
Unannotated protein; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 2 subfamily.
 
    0.659
AO062_26370
Unannotated protein.
   
  
 0.641
Your Current Organism:
Variovorax boronicumulans
NCBI taxonomy Id: 436515
Other names: KCTC 22010, NBRC 103145, V. boronicumulans, Variovorax boronicumulans Miwa et al. 2008, strain BAM-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.