STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AO062_03770Unannotated protein. (727 aa)    
Predicted Functional Partners:
AO062_03765
Unannotated protein.
 
   
 0.940
AO062_23580
Unannotated protein.
 
   
 0.741
AO062_02190
Unannotated protein.
  
     0.674
AO062_03975
Unannotated protein.
 
 
 0.640
AO062_24465
Unannotated protein.
 
 
 0.639
AO062_21310
Unannotated protein.
 
    0.605
AO062_03940
Unannotated protein.
 
 
 0.600
AO062_04300
Unannotated protein.
 
 
 0.591
AO062_03760
Unannotated protein.
       0.569
AO062_11185
Unannotated protein.
  
 
 
 0.539
Your Current Organism:
Variovorax boronicumulans
NCBI taxonomy Id: 436515
Other names: KCTC 22010, NBRC 103145, V. boronicumulans, Variovorax boronicumulans Miwa et al. 2008, strain BAM-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.