STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AO062_23820Unannotated protein. (512 aa)    
Predicted Functional Partners:
AO062_23825
Unannotated protein.
 
  
 0.939
AO062_26395
Unannotated protein.
  
 0.813
AO062_23810
Unannotated protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.811
AO062_26390
Unannotated protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.806
AO062_23815
Unannotated protein.
       0.785
AO062_09540
Unannotated protein.
   
 0.570
AO062_10350
Unannotated protein.
 
   
 0.438
AO062_10755
Unannotated protein.
   
 0.420
AO062_23830
Unannotated protein.
       0.414
Your Current Organism:
Variovorax boronicumulans
NCBI taxonomy Id: 436515
Other names: KCTC 22010, NBRC 103145, V. boronicumulans, Variovorax boronicumulans Miwa et al. 2008, strain BAM-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.