STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AO062_09225Unannotated protein; Belongs to the LysR transcriptional regulatory family. (305 aa)    
Predicted Functional Partners:
AO062_15080
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
  
     0.698
AO062_10435
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
  
     0.697
AO062_16115
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
  
     0.662
AO062_15145
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
  
     0.654
AO062_19865
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
  
     0.637
AO062_04365
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
  
     0.628
AO062_11740
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
  
     0.625
AO062_10640
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
  
     0.620
AO062_30400
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
  
     0.610
AO062_30590
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
  
     0.608
Your Current Organism:
Variovorax boronicumulans
NCBI taxonomy Id: 436515
Other names: KCTC 22010, NBRC 103145, V. boronicumulans, Variovorax boronicumulans Miwa et al. 2008, strain BAM-48
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.