STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOT10854.1Subtype I-F CRISPR-associated endonuclease Cas1; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)    
Predicted Functional Partners:
AOT10855.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.983
AOT10859.1
Type I-F CRISPR-associated endoribonuclease Cas6/Csy4; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.973
AOT10857.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.957
AOT10858.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.955
AOT10856.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.954
ihfA
Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
    
   0.761
AOT10853.1
WYL domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.592
ihfB
Integration host factor subunit beta; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
    
   0.577
AOT07445.1
Flagellar biosynthesis protein FlaG; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.495
AOT08952.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial histone-like protein family.
    
   0.469
Your Current Organism:
Pseudoalteromonas luteoviolacea
NCBI taxonomy Id: 43657
Other names: ATCC 33492, Alteromonas luteiviolacea, Alteromonas luteo-violaceus, Alteromonas luteoviolacea, CIP 103718, DSM 6061, JCM 21275, LMG 2871, LMG:2871, NBRC 103183, P. luteoviolacea, strain CH130
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