Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ALU41627.1Peptidyl-dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (603 aa)    
Predicted Functional Partners:
ALU41628.1
acyl-CoA dehydrogenase; Functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.764
ALU45087.1
Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.707
ALU41625.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.614
ALU41626.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.601
ALU42734.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.557
ALU45011.1
Peptidase S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.532
ALU42919.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.482
ALU41624.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.476
ALU43489.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.476
ALU41676.1
Adenylosuccinate lyase; Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.456
Your Current Organism:
Pseudoalteromonas rubra
NCBI taxonomy Id: 43658
Other names: ATCC 29570, Alteromonas rubra, CIP 104110, DSM 6842, LMG 2876, LMG:2876, P. rubra
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