Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ALU42001.1ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)    
Predicted Functional Partners:
ALU42000.1
Sodium ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.992
ALU42244.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 
0.914
ALU44971.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.888
ALU42243.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.855
ALU42002.1
Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.755
ALU44929.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.710
ALU42003.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.696
ALU41465.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.636
ALU44455.1
Peptide ABC transporter ATP-binding protein; Involved in resistance to antimibial peptides; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
     0.629
ALU43148.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.567
Your Current Organism:
Pseudoalteromonas rubra
NCBI taxonomy Id: 43658
Other names: ATCC 29570, Alteromonas rubra, CIP 104110, DSM 6842, LMG 2876, LMG:2876, P. rubra
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