Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ALU42002.1Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology. (543 aa)    
Predicted Functional Partners:
ALU42000.1
Sodium ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.783
ALU42003.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.780
ALU42001.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.755
ALU44971.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.755
ALU45087.1
Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.667
ALU42288.1
Thymidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.647
ALU45011.1
Peptidase S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.581
ALU41611.1
Tryptophan synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.578
ALU41960.1
Peptidase S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.563
xerC
Recombinase XerC; Site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.561
Your Current Organism:
Pseudoalteromonas rubra
NCBI taxonomy Id: 43658
Other names: ATCC 29570, Alteromonas rubra, CIP 104110, DSM 6842, LMG 2876, LMG:2876, P. rubra
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