STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALU42080.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)    
Predicted Functional Partners:
secB
Preprotein translocase subunit SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
    
 
 0.866
ALU42081.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.779
malQ
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.669
ALU42270.1
PTS sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.639
ribD
Riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway; catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.585
ALU43482.1
biotin--[acetyl-CoA-carboxylase] synthetase; Catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.578
rlmL
23S rRNA methyltransferase; Catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.551
ALU45566.1
Maltodextrin phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.540
ALU44139.1
glutamate--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.517
ALU43439.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.497
Your Current Organism:
Pseudoalteromonas rubra
NCBI taxonomy Id: 43658
Other names: ATCC 29570, Alteromonas rubra, CIP 104110, DSM 6842, LMG 2876, LMG:2876, P. rubra
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