Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALU42310.1Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (1058 aa)    
Predicted Functional Partners:
ALU42311.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.970
ALU42097.1
MFP transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.876
ALU44055.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.771
ALU44518.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.759
ALU42164.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.723
ALU43443.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.702
ALU43308.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.660
ALU45713.1
MFP transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.640
ALU42638.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.628
ALU45077.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.622
Your Current Organism:
Pseudoalteromonas rubra
NCBI taxonomy Id: 43658
Other names: ATCC 29570, Alteromonas rubra, CIP 104110, DSM 6842, LMG 2876, LMG:2876, P. rubra
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.