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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALU42310.1Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (1058 aa)    
Predicted Functional Partners:
ALU42311.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.969
ALU42097.1
MFP transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.871
ALU44055.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.767
ALU44518.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.755
ALU42164.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.719
ALU43443.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.697
ALU43308.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.655
tolC
Trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.649
ALU45713.1
MFP transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.634
ALU42638.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.622
Your Current Organism:
Pseudoalteromonas rubra
NCBI taxonomy Id: 43658
Other names: ATCC 29570, Alteromonas rubra, CIP 104110, DSM 6842, LMG 2876, LMG:2876, P. rubra
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