Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALU42316.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa)    
Predicted Functional Partners:
ALU43501.1
Ubiquinone carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.497
ALU42315.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.482
ALU43610.1
Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.462
ALU43174.1
Octaprenyl diphosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.439
ALU41728.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.433
bioB
Biotin synthase; Catalyzes the formation of biotin from dethiobiotin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.420
ALU44346.1
Geranyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.420
Your Current Organism:
Pseudoalteromonas rubra
NCBI taxonomy Id: 43658
Other names: ATCC 29570, Alteromonas rubra, CIP 104110, DSM 6842, LMG 2876, LMG:2876, P. rubra
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.