Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
ALU42368.1Xaa-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (425 aa)    
Predicted Functional Partners:
ALU42073.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.697
ALU42072.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.647
hutH
Histidine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.592
ALU45305.1
Urocanate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.586
ALU44029.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.516
ALU42369.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.506
ALU45185.1
Acyl-peptide hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.464
ALU44134.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.444
ALU45233.1
Acyl-peptide hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.434
ALU45526.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.406
Your Current Organism:
Pseudoalteromonas rubra
NCBI taxonomy Id: 43658
Other names: ATCC 29570, Alteromonas rubra, CIP 104110, DSM 6842, LMG 2876, LMG:2876, P. rubra
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