Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ALU42766.1SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)    
Predicted Functional Partners:
gloB
Hydroxyacylglutathione hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.792
ALU42533.1
Anti-sigma E factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.713
ALU42768.1
Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.696
ALU42765.1
Ribonuclease H; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.666
ALU43953.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.603
ALU42303.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.524
ALU43041.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.519
ALU43255.1
Cell division protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.502
ALU45099.1
Toluene tolerance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.491
ALU43920.1
Disulfide bond formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.488
Your Current Organism:
Pseudoalteromonas rubra
NCBI taxonomy Id: 43658
Other names: ATCC 29570, Alteromonas rubra, CIP 104110, DSM 6842, LMG 2876, LMG:2876, P. rubra
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