Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ALU42801.1Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (561 aa)    
Predicted Functional Partners:
ALU42800.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.641
ALU43484.1
Aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.556
ALU42301.1
Molecular chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.505
ALU45476.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.499
ALU45477.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.497
ALU45014.1
alanine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.487
ALU45793.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.468
ALU45251.1
Calmodulin; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.460
ALU43723.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.456
dnaJ
Molecular chaperone DnaJ; Chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.456
Your Current Organism:
Pseudoalteromonas rubra
NCBI taxonomy Id: 43658
Other names: ATCC 29570, Alteromonas rubra, CIP 104110, DSM 6842, LMG 2876, LMG:2876, P. rubra
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