Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALU42894.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)    
Predicted Functional Partners:
ALU42893.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.944
ALU45793.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.573
ALU45014.1
alanine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.549
ALU42301.1
Molecular chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.504
ALU42939.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.476
ALU42892.1
Amidinotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.464
hscA
Molecular chaperone HscA; Involved in the maturation of iron-sulfur cluster-containing proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.463
dnaK
Molecular chaperone DnaK; Heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.463
ALU45251.1
Calmodulin; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.460
ALU43723.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.456
Your Current Organism:
Pseudoalteromonas rubra
NCBI taxonomy Id: 43658
Other names: ATCC 29570, Alteromonas rubra, CIP 104110, DSM 6842, LMG 2876, LMG:2876, P. rubra
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