STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALU43069.1AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (466 aa)    
Predicted Functional Partners:
ALU43068.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.927
ALU43963.1
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living a [...]
 
   
 0.772
ALU43070.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.653
ALU43535.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.621
ALU43072.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.595
ALU43744.1
PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.593
ALU42385.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.592
ALU45872.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.571
ALU44522.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.566
ALU44819.1
Cobyrinic acid a,c-diamide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.548
Your Current Organism:
Pseudoalteromonas rubra
NCBI taxonomy Id: 43658
Other names: ATCC 29570, Alteromonas rubra, CIP 104110, DSM 6842, LMG 2876, LMG:2876, P. rubra
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.