STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALU43082.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)    
Predicted Functional Partners:
ALU45014.1
alanine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.805
flgM
Flagellar biosynthesis anti-sigma factor FlgM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.703
ALU43924.1
RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.646
ALU43121.1
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.616
ALU45766.1
Protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.609
ALU42687.1
Diadenosine tetraphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.606
ALU42334.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.588
ALU44487.1
Flagellar biosynthesis protein FlgT; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.567
ALU43515.1
Ribosome biogenesis GTPase YlqF; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.552
ALU41575.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.550
Your Current Organism:
Pseudoalteromonas rubra
NCBI taxonomy Id: 43658
Other names: ATCC 29570, Alteromonas rubra, CIP 104110, DSM 6842, LMG 2876, LMG:2876, P. rubra
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.