Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
msrA-2Methionine sulfoxide reductase A; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)    
Predicted Functional Partners:
msrB
Peptide methionine sulfoxide reductase MsrB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.988
ALU44054.1
Multidrug transporter AcrB; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.856
ALU44055.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.856
ALU43636.1
Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.641
ALU44841.1
Disulfide bond formation protein DsbE; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.641
ALU44056.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.633
gltB
Catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.588
ALU44057.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.571
msrA
Peptide methionine sulfoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.553
ALU44059.1
Adhesin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.527
Your Current Organism:
Pseudoalteromonas rubra
NCBI taxonomy Id: 43658
Other names: ATCC 29570, Alteromonas rubra, CIP 104110, DSM 6842, LMG 2876, LMG:2876, P. rubra
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