Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALU44787.1Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)    
Predicted Functional Partners:
ALU44790.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.964
ALU44788.1
dTDP-glucose 4,6-dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.939
ALU44789.1
Phosphoheptose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.899
ALU45149.1
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.783
ALU44771.1
ADP-heptose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.704
ALU44777.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.691
ALU44785.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.686
ALU44786.1
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.637
ALU44782.1
Acetoin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.589
ALU45150.1
Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.571
Your Current Organism:
Pseudoalteromonas rubra
NCBI taxonomy Id: 43658
Other names: ATCC 29570, Alteromonas rubra, CIP 104110, DSM 6842, LMG 2876, LMG:2876, P. rubra
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.