Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALU45573.1Multidrug transporter AcrB; Derived by automated computational analysis using gene prediction method: Protein Homology. (1017 aa)    
Predicted Functional Partners:
ALU45574.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.977
ALU43308.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.850
ALU42018.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.841
ALU45575.1
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
ALU45576.1
Cysteine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
ALU42164.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.680
ALU43443.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.662
ALU45713.1
MFP transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.614
ALU41461.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.603
ALU44543.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.600
Your Current Organism:
Pseudoalteromonas rubra
NCBI taxonomy Id: 43658
Other names: ATCC 29570, Alteromonas rubra, CIP 104110, DSM 6842, LMG 2876, LMG:2876, P. rubra
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