STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfiQProtein acetyltransferase; Catalyzes the acetylation of lysine; Derived by automated computational analysis using gene prediction method: Protein Homology. (889 aa)    
Predicted Functional Partners:
kch
Ion transport protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.852
KJY88676.1
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.747
agaR
Transcriptional repressor for the agaZVWA and agaSYBCDI operons; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.747
KJY85710.1
DeoR faimly transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.747
KJY90320.1
Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.732
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
     
 0.712
KJY91078.1
Deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.672
KJY90321.1
Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.665
KJY87029.1
Gramicidin synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.665
KJY82098.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.665
Your Current Organism:
Pseudoalteromonas piscicida
NCBI taxonomy Id: 43662
Other names: ATCC 15057, Alteromonas sp. (STRAIN O-7), Alteromonas sp. O-7, CIP 103300, Flavobacterium piscicida, IAM 12932, JCM 20779, NBRC 103038, NRRL B-3099, P. piscicida, Pseudomonas piscicida
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