STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydaF_5Putative ribosomal N-acetyltransferase YdaF. (257 aa)    
Predicted Functional Partners:
ald
Alanine dehydrogenase; Belongs to the AlaDH/PNT family.
  
    0.777
pta
Phosphate acetyltransferase.
    
 0.638
pvdA
L-ornithine 5-monooxygenase.
  
 
 0.628
guaB_1
Inosine-5'-monophosphate dehydrogenase.
   
  0.613
guaB_2
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
   
  0.613
gltB_2
Glutamate synthase [NADPH] large chain.
   
 
  0.608
dcp
Peptidyl-dipeptidase dcp.
       0.533
rocD
Ornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
 
  0.520
fadJ
Fatty acid oxidation complex subunit alpha.
    
  0.459
KZM37016.1
Hypothetical protein.
    
  0.452
Your Current Organism:
Oerskovia enterophila
NCBI taxonomy Id: 43678
Other names: ATCC 35307, DSM 43852, HMGB B1078, IFO 14295, JCM 7350, NBRC 14295, NRRL B-16223, O. enterophila, Promicromonospora enterophila, strain DFA-19
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