STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAL1ATP-dependent RNA helicase FAL1; ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA (By similarity). Belongs to the DEAD box helicase family. DDX48/FAL1 subfamily. (399 aa)    
Predicted Functional Partners:
Kpol_1028p67
MI domain-containing protein.
    
 0.998
Kpol_499p15
MI domain-containing protein.
   
 
 0.986
Kpol_1073p14
Uncharacterized protein.
   
 0.982
Kpol_541p46
Uncharacterized protein.
   
 0.980
Kpol_1053p12
Smg4_UPF3 domain-containing protein.
   
 0.975
Kpol_385p6
RanBD1 domain-containing protein.
   
 0.974
Kpol_543p72
Nsp1_C domain-containing protein.
    
 0.970
Kpol_1013p18
Uncharacterized protein.
   
 0.967
PXR1
Protein PXR1; Involved in rRNA-processing at A0, A1 and A2 sites and regulates negatively telomerase; Belongs to the PINX1 family.
   
 
 0.963
Kpol_499p24
RRM domain-containing protein.
   
 0.945
Your Current Organism:
Vanderwaltozyma polyspora
NCBI taxonomy Id: 436907
Other names: V. polyspora DSM 70294, Vanderwaltozyma polyspora DSM 70294, Vanderwaltozyma polyspora DSMZ 70294
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