LOC109965928 protein (Monopterus albus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC109965928

ArfGAP with SH3 domain, ankyrin repeat and PH domain 1a. (1109 aa)

Predicted Functional Partners:

exoc7

0.612

appl2

0.576

appl1

0.576

exoc5

0.531

exoc1

0.494

exoc2

0.484

rab11fip3

0.473

LOC109964779

0.473

rab11fip4

0.473

rab11a

0.441

Your Current Organism:

Monopterus albus

NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC109964779	LOC109965928	ENSMALP00000002404	ENSMALP00000000428	RAB11 family interacting protein 4 (class II) a.	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1a.	0.473
LOC109964779	exoc2	ENSMALP00000002404	ENSMALP00000032346	RAB11 family interacting protein 4 (class II) a.	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.628
LOC109964779	exoc7	ENSMALP00000002404	ENSMALP00000025749	RAB11 family interacting protein 4 (class II) a.	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.677
LOC109964779	rab11a	ENSMALP00000002404	ENSMALP00000004193	RAB11 family interacting protein 4 (class II) a.	RAB11a, member RAS oncogene family.	0.773
LOC109964779	rab11fip4	ENSMALP00000002404	ENSMALP00000030642	RAB11 family interacting protein 4 (class II) a.	RAB11 family interacting protein 4 (class II) b.	0.902
LOC109965928	LOC109964779	ENSMALP00000000428	ENSMALP00000002404	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1a.	RAB11 family interacting protein 4 (class II) a.	0.473
LOC109965928	appl1	ENSMALP00000000428	ENSMALP00000032913	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1a.	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	0.576
LOC109965928	appl2	ENSMALP00000000428	ENSMALP00000018526	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1a.	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.	0.576
LOC109965928	exoc1	ENSMALP00000000428	ENSMALP00000017810	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1a.	Exocyst complex component 1.	0.494
LOC109965928	exoc2	ENSMALP00000000428	ENSMALP00000032346	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1a.	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.484
LOC109965928	exoc5	ENSMALP00000000428	ENSMALP00000008975	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1a.	Exocyst complex component 5.	0.531
LOC109965928	exoc7	ENSMALP00000000428	ENSMALP00000025749	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1a.	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.612
LOC109965928	rab11a	ENSMALP00000000428	ENSMALP00000004193	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1a.	RAB11a, member RAS oncogene family.	0.441
LOC109965928	rab11fip3	ENSMALP00000000428	ENSMALP00000001837	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1a.	RAB11 family interacting protein 3 (class II).	0.473
LOC109965928	rab11fip4	ENSMALP00000000428	ENSMALP00000030642	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1a.	RAB11 family interacting protein 4 (class II) b.	0.473
appl1	LOC109965928	ENSMALP00000032913	ENSMALP00000000428	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1a.	0.576
appl1	appl2	ENSMALP00000032913	ENSMALP00000018526	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.	0.999
appl1	exoc1	ENSMALP00000032913	ENSMALP00000017810	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	Exocyst complex component 1.	0.414
appl1	exoc5	ENSMALP00000032913	ENSMALP00000008975	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	Exocyst complex component 5.	0.471
appl1	exoc7	ENSMALP00000032913	ENSMALP00000025749	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.485