STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tspan8Tetraspanin. (225 aa)    
Predicted Functional Partners:
ptprc
Protein tyrosine phosphatase receptor type C.
    
 0.652
ENSMALP00000023717
Si:ch211-132g1.7.
    
 
 0.584
ush1c
Usher syndrome 1C.
   
 0.526
tsg101
Tumor susceptibility 101a.
      
 0.487
sergef
Secretion regulating guanine nucleotide exchange factor.
      
 0.483
hhex
Homeobox domain-containing protein.
      
 0.483
cldn7
Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.
   
  
 0.462
cdkal1
CDK5 regulatory subunit associated protein 1-like 1.
      
 0.461
itga9
Integrin, alpha 9; Belongs to the integrin alpha chain family.
   
 0.459
itga4
Integrin alpha 4; Belongs to the integrin alpha chain family.
   
 0.459
Your Current Organism:
Monopterus albus
NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel
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