LOC109957991 protein (Monopterus albus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC109957991

Ral guanine nucleotide dissociation stimulator-like 3a. (822 aa)

Predicted Functional Partners:

LOC109974612

0.487

LOC109972842

0.487

rras

0.487

LOC109955770

0.487

CSDE1

0.487

LOC109952060

0.487

kras

0.487

LOC109959359

0.487

RAP2A

0.487

hras

0.487

Your Current Organism:

Monopterus albus

NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSDE1	LOC109957991	ENSMALP00000010039	ENSMALP00000003125	Cold shock domain containing E1, RNA-binding.	Ral guanine nucleotide dissociation stimulator-like 3a.	0.487
CSDE1	LOC109959359	ENSMALP00000010039	ENSMALP00000015442	Cold shock domain containing E1, RNA-binding.	Uncharacterized protein.	0.406
CSDE1	LOC109974612	ENSMALP00000010039	ENSMALP00000000980	Cold shock domain containing E1, RNA-binding.	Uncharacterized protein.	0.406
LOC109952060	LOC109957991	ENSMALP00000014417	ENSMALP00000003125	DIRAS family, GTP-binding RAS-like 1b.	Ral guanine nucleotide dissociation stimulator-like 3a.	0.487
LOC109955770	LOC109957991	ENSMALP00000008707	ENSMALP00000003125	Uncharacterized protein.	Ral guanine nucleotide dissociation stimulator-like 3a.	0.487
LOC109955770	LOC109959359	ENSMALP00000008707	ENSMALP00000015442	Uncharacterized protein.	Uncharacterized protein.	0.429
LOC109955770	LOC109974612	ENSMALP00000008707	ENSMALP00000000980	Uncharacterized protein.	Uncharacterized protein.	0.437
LOC109957991	CSDE1	ENSMALP00000003125	ENSMALP00000010039	Ral guanine nucleotide dissociation stimulator-like 3a.	Cold shock domain containing E1, RNA-binding.	0.487
LOC109957991	LOC109952060	ENSMALP00000003125	ENSMALP00000014417	Ral guanine nucleotide dissociation stimulator-like 3a.	DIRAS family, GTP-binding RAS-like 1b.	0.487
LOC109957991	LOC109955770	ENSMALP00000003125	ENSMALP00000008707	Ral guanine nucleotide dissociation stimulator-like 3a.	Uncharacterized protein.	0.487
LOC109957991	LOC109959359	ENSMALP00000003125	ENSMALP00000015442	Ral guanine nucleotide dissociation stimulator-like 3a.	Uncharacterized protein.	0.487
LOC109957991	LOC109972842	ENSMALP00000003125	ENSMALP00000003073	Ral guanine nucleotide dissociation stimulator-like 3a.	RAS, dexamethasone-induced 1.	0.487
LOC109957991	LOC109974612	ENSMALP00000003125	ENSMALP00000000980	Ral guanine nucleotide dissociation stimulator-like 3a.	Uncharacterized protein.	0.487
LOC109957991	RAP2A	ENSMALP00000003125	ENSMALP00000015698	Ral guanine nucleotide dissociation stimulator-like 3a.	RAP2A, member of RAS oncogene family.	0.487
LOC109957991	hras	ENSMALP00000003125	ENSMALP00000016081	Ral guanine nucleotide dissociation stimulator-like 3a.	HRas proto-oncogene, GTPase a.	0.487
LOC109957991	kras	ENSMALP00000003125	ENSMALP00000015356	Ral guanine nucleotide dissociation stimulator-like 3a.	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog.	0.487
LOC109957991	rras	ENSMALP00000003125	ENSMALP00000003684	Ral guanine nucleotide dissociation stimulator-like 3a.	RAS related.	0.487
LOC109959359	CSDE1	ENSMALP00000015442	ENSMALP00000010039	Uncharacterized protein.	Cold shock domain containing E1, RNA-binding.	0.406
LOC109959359	LOC109955770	ENSMALP00000015442	ENSMALP00000008707	Uncharacterized protein.	Uncharacterized protein.	0.429
LOC109959359	LOC109957991	ENSMALP00000015442	ENSMALP00000003125	Uncharacterized protein.	Ral guanine nucleotide dissociation stimulator-like 3a.	0.487