LOC109956686 protein (Monopterus albus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC109956686

Si:dkey-280e21.3. (604 aa)

Predicted Functional Partners:

rufy3

0.514

slf1

0.424

LOC109965222

0.418

LOC109968254

0.418

arid4b

0.418

chl1

0.418

NRCAM

0.418

nfasc

0.418

l1cam

0.418

arid4a

0.418

Your Current Organism:

Monopterus albus

NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC109956686	LOC109965222	ENSMALP00000003585	ENSMALP00000001289	Si:dkey-280e21.3.	Uncharacterized protein.	0.418
LOC109956686	LOC109968254	ENSMALP00000003585	ENSMALP00000005222	Si:dkey-280e21.3.	Neuronal cell adhesion molecule a.	0.418
LOC109956686	NRCAM	ENSMALP00000003585	ENSMALP00000017211	Si:dkey-280e21.3.	Neuronal cell adhesion molecule.	0.418
LOC109956686	arid4a	ENSMALP00000003585	ENSMALP00000027624	Si:dkey-280e21.3.	AT rich interactive domain 4A (RBP1-like).	0.418
LOC109956686	arid4b	ENSMALP00000003585	ENSMALP00000007319	Si:dkey-280e21.3.	Translocase of outer mitochondrial membrane 20.	0.418
LOC109956686	chl1	ENSMALP00000003585	ENSMALP00000012827	Si:dkey-280e21.3.	Cell adhesion molecule L1-like b.	0.418
LOC109956686	l1cam	ENSMALP00000003585	ENSMALP00000024140	Si:dkey-280e21.3.	L1 cell adhesion molecule, paralog a.	0.418
LOC109956686	nfasc	ENSMALP00000003585	ENSMALP00000022173	Si:dkey-280e21.3.	Neurofascin homolog (chicken) a.	0.418
LOC109956686	rufy3	ENSMALP00000003585	ENSMALP00000008716	Si:dkey-280e21.3.	RUN and FYVE domain containing 3.	0.514
LOC109956686	slf1	ENSMALP00000003585	ENSMALP00000012001	Si:dkey-280e21.3.	SMC5-SMC6 complex localization factor 1.	0.424
LOC109965222	LOC109956686	ENSMALP00000001289	ENSMALP00000003585	Uncharacterized protein.	Si:dkey-280e21.3.	0.418
LOC109968254	LOC109956686	ENSMALP00000005222	ENSMALP00000003585	Neuronal cell adhesion molecule a.	Si:dkey-280e21.3.	0.418
NRCAM	LOC109956686	ENSMALP00000017211	ENSMALP00000003585	Neuronal cell adhesion molecule.	Si:dkey-280e21.3.	0.418
arid4a	LOC109956686	ENSMALP00000027624	ENSMALP00000003585	AT rich interactive domain 4A (RBP1-like).	Si:dkey-280e21.3.	0.418
arid4a	arid4b	ENSMALP00000027624	ENSMALP00000007319	AT rich interactive domain 4A (RBP1-like).	Translocase of outer mitochondrial membrane 20.	0.635
arid4b	LOC109956686	ENSMALP00000007319	ENSMALP00000003585	Translocase of outer mitochondrial membrane 20.	Si:dkey-280e21.3.	0.418
arid4b	arid4a	ENSMALP00000007319	ENSMALP00000027624	Translocase of outer mitochondrial membrane 20.	AT rich interactive domain 4A (RBP1-like).	0.635
chl1	LOC109956686	ENSMALP00000012827	ENSMALP00000003585	Cell adhesion molecule L1-like b.	Si:dkey-280e21.3.	0.418
l1cam	LOC109956686	ENSMALP00000024140	ENSMALP00000003585	L1 cell adhesion molecule, paralog a.	Si:dkey-280e21.3.	0.418
nfasc	LOC109956686	ENSMALP00000022173	ENSMALP00000003585	Neurofascin homolog (chicken) a.	Si:dkey-280e21.3.	0.418