STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109961588Calpain 1, (mu/I) large subunit a; Belongs to the peptidase C2 family. (704 aa)    
Predicted Functional Partners:
cast
Calpastatin.
   
 0.678
capns1
Calpain, small subunit 1 b.
   
0.597
LOC109963244
Uncharacterized protein.
   
0.597
ENSMALP00000009760
Uncharacterized protein.
   
 
  0.517
ENSMALP00000009805
Uncharacterized protein.
   
 
  0.517
ENSMALP00000009891
Uncharacterized protein.
   
 
  0.517
ENSMALP00000023742
Uncharacterized protein.
   
 
  0.517
ENSMALP00000023793
Uncharacterized protein.
   
 
  0.517
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
   
 
 0.511
pdcd6
Programmed cell death 6.
   
0.435
Your Current Organism:
Monopterus albus
NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.