STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109968890Chromodomain helicase DNA binding protein 4a. (1843 aa)    
Predicted Functional Partners:
LOC109968327
Retinoblastoma binding protein 4.
   
 0.777
LOC109974549
WD_REPEATS_REGION domain-containing protein.
   
 0.777
LOC109960774
Methyl-CpG binding domain protein 2.
    
 0.746
LOC109974183
Methyl-CpG binding domain protein 3a.
    
 0.746
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.729
arid4a
AT rich interactive domain 4A (RBP1-like).
    
 0.729
mta2
Metastasis associated 1 family, member 2.
   
 0.715
ENSMALP00000028273
THAP-type domain-containing protein.
    
 0.699
ENSMALP00000031011
Integrase catalytic domain-containing protein.
   
 0.697
LOC109962943
Metastasis associated 1 family, member 3.
   
 0.681
Your Current Organism:
Monopterus albus
NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.