klhdc4 protein (Monopterus albus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

klhdc4

Kelch domain containing 4. (548 aa)

Predicted Functional Partners:

shcbp1

0.574

ARMC6

0.509

grwd1

0.489

cebpz

0.489

utp6

0.483

wdr74

0.467

LOC109968763

0.454

rbm28

0.445

ENSMALP00000023781

0.433

rpf2

0.431

Your Current Organism:

Monopterus albus

NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARMC6	klhdc4	ENSMALP00000028739	ENSMALP00000008713	Armadillo repeat containing 6.	Kelch domain containing 4.	0.509
ENSMALP00000023781	klhdc4	ENSMALP00000023781	ENSMALP00000008713	DUF4536 domain-containing protein.	Kelch domain containing 4.	0.433
LOC109968763	cebpz	ENSMALP00000001124	ENSMALP00000015513	PWP2 small subunit processome component.	CCAAT enhancer binding protein zeta.	0.938
LOC109968763	grwd1	ENSMALP00000001124	ENSMALP00000013347	PWP2 small subunit processome component.	Glutamate-rich WD repeat containing 1.	0.958
LOC109968763	klhdc4	ENSMALP00000001124	ENSMALP00000008713	PWP2 small subunit processome component.	Kelch domain containing 4.	0.454
LOC109968763	rbm28	ENSMALP00000001124	ENSMALP00000009007	PWP2 small subunit processome component.	RNA binding motif protein 28.	0.762
LOC109968763	rpf2	ENSMALP00000001124	ENSMALP00000027460	PWP2 small subunit processome component.	Ribosome production factor 2 homolog.	0.917
LOC109968763	utp6	ENSMALP00000001124	ENSMALP00000030579	PWP2 small subunit processome component.	UTP6 small subunit processome component.	0.999
LOC109968763	wdr74	ENSMALP00000001124	ENSMALP00000025178	PWP2 small subunit processome component.	WD repeat domain 74.	0.876
cebpz	LOC109968763	ENSMALP00000015513	ENSMALP00000001124	CCAAT enhancer binding protein zeta.	PWP2 small subunit processome component.	0.938
cebpz	grwd1	ENSMALP00000015513	ENSMALP00000013347	CCAAT enhancer binding protein zeta.	Glutamate-rich WD repeat containing 1.	0.910
cebpz	klhdc4	ENSMALP00000015513	ENSMALP00000008713	CCAAT enhancer binding protein zeta.	Kelch domain containing 4.	0.489
cebpz	rbm28	ENSMALP00000015513	ENSMALP00000009007	CCAAT enhancer binding protein zeta.	RNA binding motif protein 28.	0.990
cebpz	rpf2	ENSMALP00000015513	ENSMALP00000027460	CCAAT enhancer binding protein zeta.	Ribosome production factor 2 homolog.	0.984
cebpz	utp6	ENSMALP00000015513	ENSMALP00000030579	CCAAT enhancer binding protein zeta.	UTP6 small subunit processome component.	0.838
cebpz	wdr74	ENSMALP00000015513	ENSMALP00000025178	CCAAT enhancer binding protein zeta.	WD repeat domain 74.	0.942
grwd1	LOC109968763	ENSMALP00000013347	ENSMALP00000001124	Glutamate-rich WD repeat containing 1.	PWP2 small subunit processome component.	0.958
grwd1	cebpz	ENSMALP00000013347	ENSMALP00000015513	Glutamate-rich WD repeat containing 1.	CCAAT enhancer binding protein zeta.	0.910
grwd1	klhdc4	ENSMALP00000013347	ENSMALP00000008713	Glutamate-rich WD repeat containing 1.	Kelch domain containing 4.	0.489
grwd1	rbm28	ENSMALP00000013347	ENSMALP00000009007	Glutamate-rich WD repeat containing 1.	RNA binding motif protein 28.	0.850