STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sox5SRY-box transcription factor 5. (729 aa)    
Predicted Functional Partners:
ctnnb1
Catenin (cadherin-associated protein), beta 1.
   
 0.696
LOC109956368
HMG box domain-containing protein.
  
 
 
0.661
LOC109964151
SRY-box transcription factor 6.
  
 
 
0.660
zbtb20
Zinc finger and BTB domain containing 20.
    
 
 0.628
trip12
Thyroid hormone receptor interactor 12.
    
 
 0.614
tcf7
Transcription factor 7.
     
0.614
sox13
SRY-box transcription factor 13.
    
 
0.598
prdm16
Si:ch211-263k4.2.
    
 
 0.596
cep85
Centrosomal protein 85.
    
 
 0.557
sox10
SRY-box transcription factor 10.
    
0.506
Your Current Organism:
Monopterus albus
NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.