LOC109955774 protein (Monopterus albus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC109955774

Cyclin T2b; Belongs to the cyclin family. (612 aa)

Predicted Functional Partners:

cdk9

0.972

aff4

0.944

LOC109972358

0.865

cdk12

0.855

LOC109960611

0.855

supt5h

0.836

nelfe

0.791

supt4h1

0.791

ccnh

0.778

LOC109951387

0.768

Your Current Organism:

Monopterus albus

NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC109951387	LOC109955774	ENSMALP00000012348	ENSMALP00000013024	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Cyclin T2b; Belongs to the cyclin family.	0.768
LOC109951387	LOC109960611	ENSMALP00000012348	ENSMALP00000018616	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Cyclin-dependent kinase 13.	0.960
LOC109951387	LOC109972358	ENSMALP00000012348	ENSMALP00000003309	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.648
LOC109951387	aff4	ENSMALP00000012348	ENSMALP00000025582	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	AF4/FMR2 family, member 4.	0.664
LOC109951387	ccnh	ENSMALP00000012348	ENSMALP00000013404	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Cyclin H; Belongs to the cyclin family.	0.980
LOC109951387	cdk12	ENSMALP00000012348	ENSMALP00000010579	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Cyclin-dependent kinase 12.	0.960
LOC109951387	cdk9	ENSMALP00000012348	ENSMALP00000002743	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily.	0.977
LOC109951387	nelfe	ENSMALP00000012348	ENSMALP00000015248	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Negative elongation factor complex member E.	0.948
LOC109951387	supt4h1	ENSMALP00000012348	ENSMALP00000018850	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.998
LOC109951387	supt5h	ENSMALP00000012348	ENSMALP00000025715	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription elongation factor SPT5.	0.998
LOC109955774	LOC109951387	ENSMALP00000013024	ENSMALP00000012348	Cyclin T2b; Belongs to the cyclin family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.768
LOC109955774	LOC109960611	ENSMALP00000013024	ENSMALP00000018616	Cyclin T2b; Belongs to the cyclin family.	Cyclin-dependent kinase 13.	0.855
LOC109955774	LOC109972358	ENSMALP00000013024	ENSMALP00000003309	Cyclin T2b; Belongs to the cyclin family.	Uncharacterized protein.	0.865
LOC109955774	aff4	ENSMALP00000013024	ENSMALP00000025582	Cyclin T2b; Belongs to the cyclin family.	AF4/FMR2 family, member 4.	0.944
LOC109955774	ccnh	ENSMALP00000013024	ENSMALP00000013404	Cyclin T2b; Belongs to the cyclin family.	Cyclin H; Belongs to the cyclin family.	0.778
LOC109955774	cdk12	ENSMALP00000013024	ENSMALP00000010579	Cyclin T2b; Belongs to the cyclin family.	Cyclin-dependent kinase 12.	0.855
LOC109955774	cdk9	ENSMALP00000013024	ENSMALP00000002743	Cyclin T2b; Belongs to the cyclin family.	Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily.	0.972
LOC109955774	nelfe	ENSMALP00000013024	ENSMALP00000015248	Cyclin T2b; Belongs to the cyclin family.	Negative elongation factor complex member E.	0.791
LOC109955774	supt4h1	ENSMALP00000013024	ENSMALP00000018850	Cyclin T2b; Belongs to the cyclin family.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.791
LOC109955774	supt5h	ENSMALP00000013024	ENSMALP00000025715	Cyclin T2b; Belongs to the cyclin family.	Transcription elongation factor SPT5.	0.836