STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smg8SMG8 nonsense mediated mRNA decay factor. (907 aa)    
Predicted Functional Partners:
smg9
SMG9 nonsense mediated mRNA decay factor.
    
 0.999
smg1
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family.
   
 0.986
smg6
SMG6 nonsense mediated mRNA decay factor.
     
 0.872
smg5
SMG5 nonsense mediated mRNA decay factor.
     
 0.872
mtor
Serine/threonine-protein kinase TOR.
   
 0.865
prkdc
Protein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family.
   
 0.863
smg7
SMG7 nonsense mediated mRNA decay factor.
     
 0.844
dcp1a
Decapping mRNA 1A.
   
 
 0.824
pnrc2
Proline-rich nuclear receptor coactivator 2.
     
 0.791
Dcp1b
Uncharacterized protein.
   
 
 0.725
Your Current Organism:
Monopterus albus
NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.