LOC109974888 protein (Monopterus albus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC109974888

Si:ch1073-13h15.3. (612 aa)

Predicted Functional Partners:

LOC109972941

0.923

dhrs3

0.921

LOC109974421

0.915

sdr16c5

0.912

LOC109966688

0.910

LOC109964498

0.907

LOC109964312

0.906

ENSMALP00000013813

0.906

LOC109963184

0.904

LOC109973700

0.902

Your Current Organism:

Monopterus albus

NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMALP00000013813	LOC109963184	ENSMALP00000013813	ENSMALP00000012405	PKS_ER domain-containing protein.	Retinol saturase (all-trans-retinol 13,14-reductase).	0.906
ENSMALP00000013813	LOC109964312	ENSMALP00000013813	ENSMALP00000012888	PKS_ER domain-containing protein.	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.904
ENSMALP00000013813	LOC109964498	ENSMALP00000013813	ENSMALP00000021428	PKS_ER domain-containing protein.	Cytochrome P450, family 27, subfamily C, polypeptide 1; Belongs to the cytochrome P450 family.	0.906
ENSMALP00000013813	LOC109966688	ENSMALP00000013813	ENSMALP00000015104	PKS_ER domain-containing protein.	Cytochrome P450, family 26, subfamily A, polypeptide 1.	0.911
ENSMALP00000013813	LOC109972941	ENSMALP00000013813	ENSMALP00000008665	PKS_ER domain-containing protein.	Lecithin retinol acyltransferase b, tandem duplicate 1.	0.902
ENSMALP00000013813	LOC109973700	ENSMALP00000013813	ENSMALP00000016238	PKS_ER domain-containing protein.	Uncharacterized protein.	0.906
ENSMALP00000013813	LOC109974888	ENSMALP00000013813	ENSMALP00000015652	PKS_ER domain-containing protein.	Si:ch1073-13h15.3.	0.906
LOC109963184	ENSMALP00000013813	ENSMALP00000012405	ENSMALP00000013813	Retinol saturase (all-trans-retinol 13,14-reductase).	PKS_ER domain-containing protein.	0.906
LOC109963184	LOC109964312	ENSMALP00000012405	ENSMALP00000012888	Retinol saturase (all-trans-retinol 13,14-reductase).	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.906
LOC109963184	LOC109964498	ENSMALP00000012405	ENSMALP00000021428	Retinol saturase (all-trans-retinol 13,14-reductase).	Cytochrome P450, family 27, subfamily C, polypeptide 1; Belongs to the cytochrome P450 family.	0.922
LOC109963184	LOC109966688	ENSMALP00000012405	ENSMALP00000015104	Retinol saturase (all-trans-retinol 13,14-reductase).	Cytochrome P450, family 26, subfamily A, polypeptide 1.	0.913
LOC109963184	LOC109972941	ENSMALP00000012405	ENSMALP00000008665	Retinol saturase (all-trans-retinol 13,14-reductase).	Lecithin retinol acyltransferase b, tandem duplicate 1.	0.923
LOC109963184	LOC109973700	ENSMALP00000012405	ENSMALP00000016238	Retinol saturase (all-trans-retinol 13,14-reductase).	Uncharacterized protein.	0.903
LOC109963184	LOC109974421	ENSMALP00000012405	ENSMALP00000021153	Retinol saturase (all-trans-retinol 13,14-reductase).	Dehydrogenase/reductase (SDR family) member 4.	0.915
LOC109963184	LOC109974888	ENSMALP00000012405	ENSMALP00000015652	Retinol saturase (all-trans-retinol 13,14-reductase).	Si:ch1073-13h15.3.	0.904
LOC109963184	dhrs3	ENSMALP00000012405	ENSMALP00000003572	Retinol saturase (all-trans-retinol 13,14-reductase).	Dehydrogenase/reductase (SDR family) member 3b; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.921
LOC109963184	sdr16c5	ENSMALP00000012405	ENSMALP00000019653	Retinol saturase (all-trans-retinol 13,14-reductase).	Short chain dehydrogenase/reductase family 16C, member 5a; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.912
LOC109964312	ENSMALP00000013813	ENSMALP00000012888	ENSMALP00000013813	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	PKS_ER domain-containing protein.	0.904
LOC109964312	LOC109963184	ENSMALP00000012888	ENSMALP00000012405	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	Retinol saturase (all-trans-retinol 13,14-reductase).	0.906
LOC109964312	LOC109964498	ENSMALP00000012888	ENSMALP00000021428	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	Cytochrome P450, family 27, subfamily C, polypeptide 1; Belongs to the cytochrome P450 family.	0.906