LOC109967362 protein (Monopterus albus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC109967362

Phosphodiesterase. (840 aa)

Predicted Functional Partners:

pde6g

0.780

pde5a

0.721

LOC109972739

0.510

LOC109964708

0.442

LOC109958995

0.442

gnat1

0.442

LOC109967176

0.442

LOC109957843

0.442

LOC109962541

0.442

LOC109969698

0.442

Your Current Organism:

Monopterus albus

NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC109957843	LOC109967362	ENSMALP00000008081	ENSMALP00000016163	Guanine nucleotide binding protein (G protein) alpha v1.	Phosphodiesterase.	0.442
LOC109957843	gnat1	ENSMALP00000008081	ENSMALP00000001558	Guanine nucleotide binding protein (G protein) alpha v1.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	0.434
LOC109957843	pde5a	ENSMALP00000008081	ENSMALP00000028218	Guanine nucleotide binding protein (G protein) alpha v1.	Phosphodiesterase.	0.442
LOC109957843	pde6g	ENSMALP00000008081	ENSMALP00000026659	Guanine nucleotide binding protein (G protein) alpha v1.	Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog b.	0.708
LOC109958995	LOC109967362	ENSMALP00000000996	ENSMALP00000016163	Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2b.	Phosphodiesterase.	0.442
LOC109958995	gnat1	ENSMALP00000000996	ENSMALP00000001558	Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2b.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	0.419
LOC109958995	pde5a	ENSMALP00000000996	ENSMALP00000028218	Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2b.	Phosphodiesterase.	0.442
LOC109958995	pde6g	ENSMALP00000000996	ENSMALP00000026659	Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2b.	Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog b.	0.708
LOC109962541	LOC109967362	ENSMALP00000012766	ENSMALP00000016163	Uncharacterized protein.	Phosphodiesterase.	0.442
LOC109962541	gnat1	ENSMALP00000012766	ENSMALP00000001558	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	0.421
LOC109962541	pde5a	ENSMALP00000012766	ENSMALP00000028218	Uncharacterized protein.	Phosphodiesterase.	0.442
LOC109962541	pde6g	ENSMALP00000012766	ENSMALP00000026659	Uncharacterized protein.	Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog b.	0.708
LOC109964708	LOC109967362	ENSMALP00000000920	ENSMALP00000016163	Guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O, b.	Phosphodiesterase.	0.442
LOC109964708	gnat1	ENSMALP00000000920	ENSMALP00000001558	Guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O, b.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	0.423
LOC109964708	pde5a	ENSMALP00000000920	ENSMALP00000028218	Guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O, b.	Phosphodiesterase.	0.442
LOC109964708	pde6g	ENSMALP00000000920	ENSMALP00000026659	Guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O, b.	Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog b.	0.708
LOC109967176	LOC109967362	ENSMALP00000006135	ENSMALP00000016163	Uncharacterized protein.	Phosphodiesterase.	0.442
LOC109967176	gnat1	ENSMALP00000006135	ENSMALP00000001558	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	0.421
LOC109967176	pde5a	ENSMALP00000006135	ENSMALP00000028218	Uncharacterized protein.	Phosphodiesterase.	0.442
LOC109967176	pde6g	ENSMALP00000006135	ENSMALP00000026659	Uncharacterized protein.	Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog b.	0.708