ttll11 protein (Monopterus albus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ttll11

Tubulin tyrosine ligase-like family, member 11. (822 aa)

Predicted Functional Partners:

fbxw2

0.619

psmd5

0.618

ttll5

0.601

ttll12

0.585

poc5

0.563

ttll1

0.557

cog6

0.526

agbl5

0.489

agtpbp1

0.469

agbl2

0.469

Your Current Organism:

Monopterus albus

NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
agbl2	ttll11	ENSMALP00000019242	ENSMALP00000016948	ATP/GTP binding protein-like 2.	Tubulin tyrosine ligase-like family, member 11.	0.469
agbl2	ttll12	ENSMALP00000019242	ENSMALP00000021027	ATP/GTP binding protein-like 2.	Tubulin tyrosine ligase-like family, member 12.	0.404
agbl2	ttll5	ENSMALP00000019242	ENSMALP00000006946	ATP/GTP binding protein-like 2.	Tubulin tyrosine ligase-like family, member 5.	0.477
agbl5	ttll1	ENSMALP00000027407	ENSMALP00000015444	ATP/GTP binding protein-like 5.	Tubulin tyrosine ligase-like family, member 1.	0.418
agbl5	ttll11	ENSMALP00000027407	ENSMALP00000016948	ATP/GTP binding protein-like 5.	Tubulin tyrosine ligase-like family, member 11.	0.489
agbl5	ttll12	ENSMALP00000027407	ENSMALP00000021027	ATP/GTP binding protein-like 5.	Tubulin tyrosine ligase-like family, member 12.	0.429
agbl5	ttll5	ENSMALP00000027407	ENSMALP00000006946	ATP/GTP binding protein-like 5.	Tubulin tyrosine ligase-like family, member 5.	0.459
agtpbp1	ttll11	ENSMALP00000014891	ENSMALP00000016948	ATP/GTP binding protein 1.	Tubulin tyrosine ligase-like family, member 11.	0.469
agtpbp1	ttll12	ENSMALP00000014891	ENSMALP00000021027	ATP/GTP binding protein 1.	Tubulin tyrosine ligase-like family, member 12.	0.404
agtpbp1	ttll5	ENSMALP00000014891	ENSMALP00000006946	ATP/GTP binding protein 1.	Tubulin tyrosine ligase-like family, member 5.	0.477
cog6	fbxw2	ENSMALP00000015446	ENSMALP00000020352	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	F-box and WD repeat domain containing 2.	0.449
cog6	psmd5	ENSMALP00000015446	ENSMALP00000007038	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Proteasome 26S subunit, non-ATPase 5.	0.457
cog6	ttll11	ENSMALP00000015446	ENSMALP00000016948	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Tubulin tyrosine ligase-like family, member 11.	0.526
fbxw2	cog6	ENSMALP00000020352	ENSMALP00000015446	F-box and WD repeat domain containing 2.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.449
fbxw2	psmd5	ENSMALP00000020352	ENSMALP00000007038	F-box and WD repeat domain containing 2.	Proteasome 26S subunit, non-ATPase 5.	0.593
fbxw2	ttll11	ENSMALP00000020352	ENSMALP00000016948	F-box and WD repeat domain containing 2.	Tubulin tyrosine ligase-like family, member 11.	0.619
poc5	ttll11	ENSMALP00000014327	ENSMALP00000016948	POC5 centriolar protein homolog (Chlamydomonas).	Tubulin tyrosine ligase-like family, member 11.	0.563
psmd5	cog6	ENSMALP00000007038	ENSMALP00000015446	Proteasome 26S subunit, non-ATPase 5.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.457
psmd5	fbxw2	ENSMALP00000007038	ENSMALP00000020352	Proteasome 26S subunit, non-ATPase 5.	F-box and WD repeat domain containing 2.	0.593
psmd5	ttll11	ENSMALP00000007038	ENSMALP00000016948	Proteasome 26S subunit, non-ATPase 5.	Tubulin tyrosine ligase-like family, member 11.	0.618