STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fem1bFem-1 homolog b (C. elegans). (550 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
    
 0.947
cul2
Cullin 2; Belongs to the cullin family.
    
 0.915
fnip1
Folliculin interacting protein 1.
    
 0.869
eloc
Skp1_POZ domain-containing protein.
    
 0.810
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.804
COPS6
COP9 signalosome subunit 6.
    
 0.783
LOC109973625
Ubiquitin-like domain-containing protein.
    
 0.764
commd8
COMM domain containing 8.
   
  0.657
commd4
COMM domain containing 4.
    
  0.635
cops4
COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).
    
 0.632
Your Current Organism:
Monopterus albus
NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel
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