STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps35Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (798 aa)    
Predicted Functional Partners:
vps26a
VPS26, retromer complex component A.
   
 0.999
vps29
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
   
 0.999
snx3
Sorting nexin 3.
   
 0.972
snx12
Sorting nexin 12.
   
 0.972
LOC109967720
Uncharacterized protein.
   
 0.967
ENSMALP00000008671
Uncharacterized protein.
   
 0.967
vps26b
VPS26, retromer complex component B.
   
 0.967
snx2
Sorting nexin 2.
   
 0.944
snx1
Sorting nexin 1b.
   
 0.927
LOC109972260
Sorting nexin 1a.
   
 0.927
Your Current Organism:
Monopterus albus
NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel
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