LOC109966091 protein (Monopterus albus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC109966091

Glypican 5a; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. (565 aa)

Predicted Functional Partners:

SDC3

0.558

dcn

0.547

unc5d

0.541

LOC109969759

0.541

LOC109957970

0.539

LOC109957895

0.539

LOC109972233

0.539

LOC109972245

0.539

ext2

0.535

ENSMALP00000032390

0.535

Your Current Organism:

Monopterus albus

NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMALP00000032390	LOC109966091	ENSMALP00000032390	ENSMALP00000023441	Syndecan domain-containing protein.	Glypican 5a; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	0.535
ENSMALP00000032390	SDC3	ENSMALP00000032390	ENSMALP00000023572	Syndecan domain-containing protein.	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	0.687
ENSMALP00000032390	dcn	ENSMALP00000032390	ENSMALP00000016821	Syndecan domain-containing protein.	Decorin; May affect the rate of fibrils formation.	0.828
ENSMALP00000032390	ext2	ENSMALP00000032390	ENSMALP00000027550	Syndecan domain-containing protein.	Exostosin glycosyltransferase 2; Belongs to the glycosyltransferase 47 family.	0.599
LOC109957895	LOC109957970	ENSMALP00000007577	ENSMALP00000004383	Uncharacterized protein.	Notum pectinacetylesterase 2.	0.902
LOC109957895	LOC109966091	ENSMALP00000007577	ENSMALP00000023441	Uncharacterized protein.	Glypican 5a; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	0.539
LOC109957895	LOC109972245	ENSMALP00000007577	ENSMALP00000031351	Uncharacterized protein.	Notum, palmitoleoyl-protein carboxylesterase a.	0.901
LOC109957970	LOC109957895	ENSMALP00000004383	ENSMALP00000007577	Notum pectinacetylesterase 2.	Uncharacterized protein.	0.902
LOC109957970	LOC109966091	ENSMALP00000004383	ENSMALP00000023441	Notum pectinacetylesterase 2.	Glypican 5a; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	0.539
LOC109957970	LOC109972245	ENSMALP00000004383	ENSMALP00000031351	Notum pectinacetylesterase 2.	Notum, palmitoleoyl-protein carboxylesterase a.	0.902
LOC109966091	ENSMALP00000032390	ENSMALP00000023441	ENSMALP00000032390	Glypican 5a; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	Syndecan domain-containing protein.	0.535
LOC109966091	LOC109957895	ENSMALP00000023441	ENSMALP00000007577	Glypican 5a; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	Uncharacterized protein.	0.539
LOC109966091	LOC109957970	ENSMALP00000023441	ENSMALP00000004383	Glypican 5a; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	Notum pectinacetylesterase 2.	0.539
LOC109966091	LOC109969759	ENSMALP00000023441	ENSMALP00000024013	Glypican 5a; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	Unc-5 netrin receptor Da.	0.541
LOC109966091	LOC109972233	ENSMALP00000023441	ENSMALP00000031328	Glypican 5a; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	Notum, palmitoleoyl-protein carboxylesterase a.	0.539
LOC109966091	LOC109972245	ENSMALP00000023441	ENSMALP00000031351	Glypican 5a; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	Notum, palmitoleoyl-protein carboxylesterase a.	0.539
LOC109966091	SDC3	ENSMALP00000023441	ENSMALP00000023572	Glypican 5a; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	0.558
LOC109966091	dcn	ENSMALP00000023441	ENSMALP00000016821	Glypican 5a; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	Decorin; May affect the rate of fibrils formation.	0.547
LOC109966091	ext2	ENSMALP00000023441	ENSMALP00000027550	Glypican 5a; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	Exostosin glycosyltransferase 2; Belongs to the glycosyltransferase 47 family.	0.535
LOC109966091	unc5d	ENSMALP00000023441	ENSMALP00000002014	Glypican 5a; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	Unc-5 netrin receptor Db.	0.541