bivm protein (Monopterus albus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

bivm

Basic, immunoglobulin-like variable motif containing. (502 aa)

Predicted Functional Partners:

ercc3

0.960

ercc6

0.960

gtf2h1

0.956

ercc2

0.955

pcna

0.928

Fancm

0.927

mus81

0.915

ercc4

0.887

LOC109959671

0.883

ercc1

0.865

Your Current Organism:

Monopterus albus

NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Fancm	LOC109959671	ENSMALP00000018889	ENSMALP00000011164	Helicase ATP-binding domain-containing protein.	General transcription factor IIH subunit.	0.696
Fancm	bivm	ENSMALP00000018889	ENSMALP00000024229	Helicase ATP-binding domain-containing protein.	Basic, immunoglobulin-like variable motif containing.	0.927
Fancm	ercc1	ENSMALP00000018889	ENSMALP00000017778	Helicase ATP-binding domain-containing protein.	Excision repair cross-complementation group 1.	0.999
Fancm	ercc2	ENSMALP00000018889	ENSMALP00000008467	Helicase ATP-binding domain-containing protein.	Excision repair cross-complementation group 2.	0.901
Fancm	ercc3	ENSMALP00000018889	ENSMALP00000021394	Helicase ATP-binding domain-containing protein.	Excision repair cross-complementation group 3.	0.913
Fancm	ercc4	ENSMALP00000018889	ENSMALP00000013633	Helicase ATP-binding domain-containing protein.	Excision repair cross-complementation group 4.	0.839
Fancm	ercc6	ENSMALP00000018889	ENSMALP00000023058	Helicase ATP-binding domain-containing protein.	Excision repair cross-complementation group 6.	0.878
Fancm	gtf2h1	ENSMALP00000018889	ENSMALP00000007667	Helicase ATP-binding domain-containing protein.	General transcription factor IIH, polypeptide 1.	0.683
Fancm	mus81	ENSMALP00000018889	ENSMALP00000011813	Helicase ATP-binding domain-containing protein.	MUS81 structure-specific endonuclease subunit.	0.999
Fancm	pcna	ENSMALP00000018889	ENSMALP00000028491	Helicase ATP-binding domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.997
LOC109959671	Fancm	ENSMALP00000011164	ENSMALP00000018889	General transcription factor IIH subunit.	Helicase ATP-binding domain-containing protein.	0.696
LOC109959671	bivm	ENSMALP00000011164	ENSMALP00000024229	General transcription factor IIH subunit.	Basic, immunoglobulin-like variable motif containing.	0.883
LOC109959671	ercc1	ENSMALP00000011164	ENSMALP00000017778	General transcription factor IIH subunit.	Excision repair cross-complementation group 1.	0.841
LOC109959671	ercc2	ENSMALP00000011164	ENSMALP00000008467	General transcription factor IIH subunit.	Excision repair cross-complementation group 2.	0.999
LOC109959671	ercc3	ENSMALP00000011164	ENSMALP00000021394	General transcription factor IIH subunit.	Excision repair cross-complementation group 3.	0.999
LOC109959671	ercc4	ENSMALP00000011164	ENSMALP00000013633	General transcription factor IIH subunit.	Excision repair cross-complementation group 4.	0.734
LOC109959671	ercc6	ENSMALP00000011164	ENSMALP00000023058	General transcription factor IIH subunit.	Excision repair cross-complementation group 6.	0.780
LOC109959671	gtf2h1	ENSMALP00000011164	ENSMALP00000007667	General transcription factor IIH subunit.	General transcription factor IIH, polypeptide 1.	0.999
LOC109959671	mus81	ENSMALP00000011164	ENSMALP00000011813	General transcription factor IIH subunit.	MUS81 structure-specific endonuclease subunit.	0.633
bivm	Fancm	ENSMALP00000024229	ENSMALP00000018889	Basic, immunoglobulin-like variable motif containing.	Helicase ATP-binding domain-containing protein.	0.927