STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109965109WD repeat domain 37. (452 aa)    
Predicted Functional Partners:
PACS1
Phosphofurin acidic cluster sorting protein 1a.
    
 
 0.746
ift140
Intraflagellar transport 140 homolog (Chlamydomonas).
    
 0.701
wdr48
WD repeat domain 48b.
    
 0.690
mad2l1
MAD2 mitotic arrest deficient-like 1 (yeast).
   
 0.660
taf12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.648
taf2
TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.646
LOC109952318
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.645
tex10
Testis expressed 10.
   
 0.644
taf10
TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.643
cpsf1
Cleavage and polyadenylation specific factor 1.
   
 0.634
Your Current Organism:
Monopterus albus
NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel
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