STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG17729.1Patatin-like phospholipase. (452 aa)    
Predicted Functional Partners:
KRG19310.1
Hypothetical protein.
  
     0.773
KRG17444.1
Hypothetical protein.
  
     0.757
KRG17879.1
Hypothetical protein.
  
     0.756
KRG19381.1
Patatin-like phospholipase.
  
     0.750
KRG17214.1
Hypothetical protein.
  
     0.750
KRG18143.1
Alpha/beta hydrolase family protein.
  
     0.747
KRG17826.1
Preprotein translocase subunit SecA.
  
     0.747
KRG20071.1
Hypothetical protein.
  
     0.744
vjbR
HTH-type quorum sensing-dependent transcriptional regulator VjbR.
  
     0.738
ankX_6
Phosphocholine transferase AnkX.
  
  
  0.738
Your Current Organism:
Berkiella cookevillensis
NCBI taxonomy Id: 437022
Other names: C. Berkiella cookevillensis, Candidatus Berkiella cookevillensis, Coxiellaceae bacterium CC99, Legionella-like amoebal pathogen CC99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.