Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KRG17732.1Hypothetical protein. (176 aa)    
Predicted Functional Partners:
KRG17731.1
Hypothetical protein.
       0.773
KRG17826.1
Preprotein translocase subunit SecA.
  
     0.562
KRG19137.1
Neisseria PilC protein.
  
     0.538
KRG17444.1
Hypothetical protein.
  
     0.538
vjbR
HTH-type quorum sensing-dependent transcriptional regulator VjbR.
  
     0.537
KRG18318.1
IQ calmodulin-binding motif protein.
  
     0.507
KRG19136.1
Hypothetical protein.
  
     0.503
KRG18408.1
Calx-beta domain protein.
  
     0.488
KRG18070.1
Hypothetical protein.
  
     0.470
KRG19379.1
Hypothetical protein.
  
     0.463
Your Current Organism:
Berkiella cookevillensis
NCBI taxonomy Id: 437022
Other names: C. Berkiella cookevillensis, Candidatus Berkiella cookevillensis, Coxiellaceae bacterium CC99, Legionella-like amoebal pathogen CC99
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