STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000716445_05239Unannotated protein. (345 aa)    
Predicted Functional Partners:
GCA_000716445_03852
Unannotated protein.
    
 
 0.912
GCA_000716445_04296
Unannotated protein.
    
   0.621
GCA_000716445_02880
Unannotated protein.
    
   0.608
GCA_000716445_06949
Unannotated protein.
   
   0.605
GCA_000716445_04388
Unannotated protein.
   
   0.602
GCA_000716445_01324
Unannotated protein.
    
   0.578
GCA_000716445_04846
Unannotated protein.
    
   0.578
GCA_000716445_01336
Unannotated protein.
    
   0.547
GCA_000716445_03202
Unannotated protein.
    
 0.513
GCA_000716445_05233
Unannotated protein.
 
  
  0.475
Your Current Organism:
Streptomyces wedmorensis
NCBI taxonomy Id: 43759
Other names: ATCC 21239, Actinomyces wedmorensis, BCRC 12667, CCRC 12667, CCRC:12667, CECT 3245, DSM 41676, ICMP 12544, IFO 14062, JCM 4937, NBRC 14062, NRRL 3426, S. wedmorensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.