Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
D8M20_10845 | DI558_04715 | GCA_001054395_00097 | GCA_001054395_00096 | Unannotated protein. | Unannotated protein. | 0.910 |
D8M20_10845 | GCA_001054395_00095 | GCA_001054395_00097 | GCA_001054395_00095 | Unannotated protein. | Unannotated protein. | 0.835 |
D8M20_10845 | dnaA | GCA_001054395_00097 | GCA_001054395_01409 | Unannotated protein. | Unannotated protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.438 |
D8M20_10845 | dnaB | GCA_001054395_00097 | GCA_001054395_00157 | Unannotated protein. | Unannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.870 |
DI558_04715 | D8M20_10845 | GCA_001054395_00096 | GCA_001054395_00097 | Unannotated protein. | Unannotated protein. | 0.910 |
DI558_04715 | GCA_001054395_00095 | GCA_001054395_00096 | GCA_001054395_00095 | Unannotated protein. | Unannotated protein. | 0.990 |
GCA_001054395_00095 | D8M20_10845 | GCA_001054395_00095 | GCA_001054395_00097 | Unannotated protein. | Unannotated protein. | 0.835 |
GCA_001054395_00095 | DI558_04715 | GCA_001054395_00095 | GCA_001054395_00096 | Unannotated protein. | Unannotated protein. | 0.990 |
GCA_001054395_00095 | dnaA | GCA_001054395_00095 | GCA_001054395_01409 | Unannotated protein. | Unannotated protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.438 |
GCA_001054395_00095 | dnaB | GCA_001054395_00095 | GCA_001054395_00157 | Unannotated protein. | Unannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.860 |
dnaA | D8M20_10845 | GCA_001054395_01409 | GCA_001054395_00097 | Unannotated protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | Unannotated protein. | 0.438 |
dnaA | GCA_001054395_00095 | GCA_001054395_01409 | GCA_001054395_00095 | Unannotated protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | Unannotated protein. | 0.438 |
dnaA | dnaB | GCA_001054395_01409 | GCA_001054395_00157 | Unannotated protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | Unannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.940 |
dnaB | D8M20_10845 | GCA_001054395_00157 | GCA_001054395_00097 | Unannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | Unannotated protein. | 0.870 |
dnaB | GCA_001054395_00095 | GCA_001054395_00157 | GCA_001054395_00095 | Unannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | Unannotated protein. | 0.860 |
dnaB | dnaA | GCA_001054395_00157 | GCA_001054395_01409 | Unannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | Unannotated protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.940 |