STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KKO77387.1rRNA methyltransferase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. (156 aa)    
Predicted Functional Partners:
folD
Methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
  
    0.727
KKO77385.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.715
KKO77388.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.487
KKO78490.1
DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.448
Your Current Organism:
Corynebacterium striatum
NCBI taxonomy Id: 43770
Other names: ATCC 6940, Bacterium striatum, C. striatum, CCUG 27949, CIP 81.15, DSM 20668, IFO 15291, JCM 9390, NBRC 15291, NCTC 764
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